Sam investigates a series of murders which bear striking similarities to the methods of a killer whom Bailey put in prison 10 years earlier. Sam suspects that the real culprit is still free, and through her gifted insight, she finds clues in the ancient I Ching art of divination that lead her to a high-ranking military officer, who may be protecting the slayer.
The day after Jack's clever escape from the prison after Samantha unsuccessfully tried to bait him and she killed Sharon instead, Samantha must look into herself in order to find him. Everything seems to point to her childhood which reveals that Jack has apparently stalked her all his life. Then, Jack abducts an infant, and tries to lure Sam into finding him in which the VCTF learns Jack's real identity (so it seems).
The team investigates a serial rapist-turned-murderer in Illinois, whose sporadic timing of the attacks puzzles Sam as well as the connection between his victims whom are left in the woods. Sam figures out that the killer is an angry and frustrated married man taking out his rage and frustration on about-to-be-wed women. Meanwhile, with Jack-of-All-Trades finally captured and imprisoned, Sam begins searching for a new house for her and Chloe.
Jarod and the FBI's Rachel Burke discover that the two dirty Secret Service agents, who are their most direct link to the killers of a fellow agent, are found slain, forcing them to begin their investigation all over again. However, while romantic sparks fly between the pair, Jarod suddenly disappears and is tortured by the murderer, who is on a crazed mission to eliminate everyone he thinks is involved in the agency's corruption.
While shopping in a convenience store with his girlfriend Kate, Agent John Grant intercedes during a robbery, but when Kate is wounded and fights for her life, Rachel and Bailey are concerned that he will mete out his own justice outside the law. Even John's shooting of a suspect comes under review, prompting him to angrily resign and grapple with his overwhelming emotions of guilt for Kate's grave condition
When Rachel visits her old college to appear on a radio call-in show to discuss a series of ongoing sexual assaults on campus, the case takes a peculiar personal turn when the rapist repeatedly dials up to mock her on-air, prompting an ongoing mind game of cat-and-mouse between them. On other fronts, Rachel finds herself drawn again to an old flame who is now married to her good friend and later meets the therapist assigned to her brother's drug rehabilitation. Likewise, George slips in his shaky bid to end his own addiction to painkillers.
After a police officer and other authority figures are found stabbed in the backs, Rachel centers her investigation on a young woman, Pamela, who is reported to have assumed multiple identities which probably spring from memories of early child abuse. But Rachel faces an even greater personal threat from an FBI honcho who has falsely accused her of forcing a sexual relationship of a subordinate -- a charge that could ruin her career. Elsewhere, Bailey confronts George over his reliance on prescription drugs and orders him to get help.
Rachel, Bailey and the team head to Yosemite National Park where a maniac brutally killed a mother and her two daughters, and while circumstantial evidence points to a local outlaw biker, Rachel constructs a different suspect profile -- one who feels remorse and might have sibling issues. Meanwhile, George's lingering substance abuse problem causes a dangerous embarrassment for Bailey and the VCTF just as an attractive Congresswoman begins an investigation of the unit, and she is most impressed by Bailey. Back at home, Rachel's budding romance with her brother's drug counselor hits a snag.
A tormented Rachel must push aside her personal nightmares when she realizes that a disturbed child slayer, whom she could not convict as a prosecutor years before, has resumed kidnapping young girls and putting them in gilded cages where he worships them as virginal ""princesses."" At the same time, Rachel is troubled by the sudden disappearance of her drug-addicted brother from a halfway house and her romantic relationship with therapist Tom enters a new stage. Also, George frets about the hot shot computer whiz who's temporarily replaced him while he's on leave due to his own struggle with narcotics.
A desperate Rachel and the VCTF team cast about wildly to quickly form a profile of an anonymous sniper who's perched atop the pump house of a dam with a commanding view of his victims in an adjoining park, but their options are limited out of fear that the shooter may have wired explosives that could inundate downtown Atlanta. While the body count rises, John risks his life to save some trapped patrons and Rachel suspects the murderer might be an enraged husband whose philandering wife is pinned down with her lover.
Rachel and the team search for a serial killer who does not seem to follow a pattern following the abduction of a 10-year-old boy from a local diner. Meanwhile, Bailey must testify before a congressional subcommittee to save VCTF funding which is threatened to be cut off by Congresswoman Archer. Also, Rachel find that her apartment was broken into and the audiotape she made of Joel Marks confessing to planting a wire on her has reappeared in the court dockets where Marks is dismissed from the FBI and vows revenge against Rachel.
When a talented concert pianist is found slain, Rachel suspects the victim's prodding parents until she discovers the young woman was pregnant and that her baby was forcibly delivered and kidnapped. But her biggest surprise comes when Jarod re-surfaces at her door. While the two indulge their mutual romantic passion, Jarod's mission is to help her deal with the threat posed by Marks, a fugitive FBI agent who delights in tormenting her.
Rachel is emotionally distraught after her brother's death and she's further rattled by the mind games played by wanted ex-Agent Marks, who she believes is responsible for a series of murders, but Marks needs her to accomplish his own agenda. Malone has even more concerns when he is ordered to conduct a performance review of his VCTF members as rumors fly in Congress that the elite unit will be disbanded.