Professor Cluck has invented a super-growth formula which he uses on some chickens in his plan to become President of the World.
Dr. Hansenfoot's time machine is stolen by Ugh the Pug and he uses it to commit crimes using prehistoric times as a hideout.
Shark Yo Yo has defrosted a giant octopus which he uses to rob ships at sea.
The Blobobians have approached Earth and have captured the Robonic Stooges to determine if there is intelligent life on Earth.
A mummy with magical talents has stolen the Crown of King Tut-Tut.
Dr. Crackula has stolen the brain of Dr. Brainly (the smartest man in the world) and then captures Curly to place Dr. Brainly's intelligence into him.
Ludwig Lillyput uses a miniaturizing formula to shrink nations as part of revenge on those that ridiculed his ideas.
Klondike Mike and his Yeti are stealing Alaska's oil in order to sell it and make Klondike Mike the wealthiest man in the world.
A vacuum cleaner-riding witch named Mother Goose is on the loose and the Robonic Stooges are sent to capture her.
Tricker Mortis the Ivory Poacher is stealing elephants.
Professor Octane has created a Zoom Zoom super-fuel, but doesn't know what he used to make it since he made it by accident. Unfortunately for him, Ethel Methel has kidnapped Professor Octane and the super-fuel. It's up to the Robonic Stooges to save the Professor, recover the super-fuel, and capture Ethel Methel.
The Robonic Stooges unknowingly free an evil genie who then goes on a rampage.
In Ancient Greece, Achilles the Heel uses a special potion to control Hercules in a plot to become king of all Greece.
A fish-man from Atlantis has stolen a submarine to add to his collected specimens.
Mr. Toy Ploy is robbing toy stores in order to force people to buy the stolen toys from him.
Coach Roach and his Croakers Football Team are using special shoulderpads to cheat their way to the championships. The Robonic Stooges are sent to keep the game honorable.
Blackbeard is robbing ships at sea.
The Amazing Bongo Brothers are abducting the circus people that fired them from the circus.
After being thrown out of the Mounties for his pranks, Pierre LeSly is discrediting the Mounties and it's up to the Robonic Stooges to stop him.
In his revenge on the local villagers, Count von Crankenstein plans to transform an ordinary poodle into a wolfman. Unfortunately, an accident merges the two into Poodleman.
Professor Hate is robbing millionaires on their yachts.
Mouse Louse uses his Hypno-Harp to take control of the students at Junior Junior High.
While making a cake for Moe, Curly mistakes a container of yeast for a container of sleeping powder. This causes them to fall asleep until they wake up in their old age in the year 2070 where Agent 000 the III has them stop Dr. Glueco and his glue monster Gloop.
In 17th-Century France, King Fouie the 14th is a puppet in Cardinal Poreleau's plan to rule France. With the Three Musketeers imprisoned, it's up to the Robonic Stooges to stop Cardinal Poreleau.
The robotic outlaw Yulesinner has taken over wild-west-themed park called Pest World.
Aristotle Beastly has stolen a 20-story gorilla and uses it to commit crimes.
In San Francisco at the turn of the century, Dr. Jekyll Hyde uses his Red Hot Atomic Pepper that creates another side of him that plans vengeance on the Robonic Stooges for locking "them" away.
Once upon a time, an evil queen puts Ebony Black to sleep with a poison baked apple in a plot to keep her from completing a castle next to her castle. When the queen ends up making off with Ebony Black, the Robonic Stooges are sent to find Ebony and wake her.
Blooperman demands a raise of $1,000 an hour from Agent 000, which he's unable to pay Blooperman. To keep Blooperman from heading to the side of evil, Agent 000 sends the Robonic Stooges to bring him back.
Curly accidentally uses a super concentrated fertilizer that causes a beanstalk to grow out throughout the city. They soon use a super vitamin on a caterpillar to eat the beanstalk which also turns into a problem.
In the year 3001, Galacto is using his Laser Eraser to erase the Earth's cities in a plan to conquer Earth.
In this clip episode, Agent 111 (Agent 000's superior) has grown tired of the Robonic Stooges' bungling. So Agent 111 holds a trial to determine what to do with them.