Soon after arrival in the Great Valley, the little dinos chase some Egg Stealers into the Mysterious Beyond and discover an egg from which a Sharptooth hatches. They call him Chomper, and all is well until he gets interested in Cera's tail, bites it, and gets in trouble. But they made a hole in the Great Wall and the Egg Stealers are out for revenge.
A herd of farwalker longnecks visits the valley, telling that their homeland was transformed into the Land of Mists. Grandpa Longneck then becomes mortally ill and Littlefoot, along with a young longneck from the herd named Ali, sets out to find the cure: the Night Flower, which grows in... the Land of Mists! Little foot goes on an adventure with Ali, except Ali is afraid of his friends.... But things change when she must find help to save Littlefoot- and save his grandpa!
Leaf gobblers appear and eat all of the green food in the Great Valley and the herds leave. The gang set out to find green food so their herds will not break up after a disagreement. While doing this they wind up on an island and meet a friend they have not seen in a while. Chomper! Chomper is now old enough to talk- and Cera is suspicious about his kind- AND HIS MOM AND DAD!
A large longneck named Doc appears in the valley, and Littlefoot believes him to be the Lone Dinosaur of legend. Later Littlefoot and his friends accidentally break off one of the stone teeth of Saurus Rock when searching for Cera's niece and nephew, Dinah and Dana- who cause trouble for Cera! and as told in the legend bad luck seems to descend upon the valley. Unfortunately the adults blame Doc!
Littlefoot sees a strange flying rock one night while everyone is sleeping. The valley has some visitors, among them Petrie's uncle Pterano and some rainbowfaces that seem to talk in riddles and explain that the rock may be a "Stone of Cold Fire". Ducky is taken captive by Pterano and his henchmen and the gang set out to save her from her captors who have set out to capture the stone of cold fire for themselves.
Some spiketail farwalkers visit the valley. During their visit snow falls upon the valley. Spike, who has befriended Tippy, goes with the spiketails. Ducky sets out to bring Spike back and the gang set out to save Ducky. Meanwhile, Mr.Thicknose seeks trouble upon Littlefoot, and spills a deep secret.
During a bad rainy season more rain than usual falls upon the Great Valley, so much that it floods part of it. Littlefoot meets a happy, funny talking little fish named Mo, who lives there but also a huge swimming sharptooth. An earthshake traps the gang and they go on a journey to get home - returning their new friend on the way. Also, Cera is a tad annoyed with Mo, who doesn't want to be serious. Though things change in the end.
It is almost time for the Great Valley herd to have some of the tree sweets. Something knocks them down and it is discovered some tiny dinos have moved into the Great Valley. Littlefoot makes some new friends, like Skitter and Lizzie. But must make a difficult decision. Meanwhile, Cera's father falls in love with an old friend, Tria, but does Cera agree with having a mother?
One night, Ruby tells the group a scary story about an invisible dinosaur named 'Hidden Runner and gives everyone scary sleep stories. They see Mr Thicknose to tell him that she made up the story and there is nothing to worry about, but the story of Hidden Runner was true, and they decide to venture into the Mysterious Beyond to search for him.
On the day of the Falling Rocks of Many Nights (meteor shower), Ruby remembers a memory of her family meeting at Hanging Rock when she lived in the Mysterious Beyond. Ruby adventures alone to find her family, but her friends come along to help. They meet Skip along the way, a mammal who knows the Mysterious Beyond very well, and the gang learns an important lesson of being family.
The series finale. Littlefoot, Ducky, Petrie and Chomper (followed by Hyp, Nod and Mutt) find a nest of Fast Biter eggs. They decide to carry the eggs away from the valley so the baby sharpteeth can grow up without eating anyone and set off on a journey into the mysterious beyond. They don't know that the mother sharptooth is in hot pursuit though, and she wants her eggs back at all costs.
Littlefoot and friends set out to on an adventure to find his father after he doesn't return from an important journey.